Violin plot of intra-correlation distribution

Source: R/plotting_functions.R

Violin plot of intra-correlation distribution

plot_intra_correlation_scExp(
  scExp_cf,
  by = c("sample_id", "cell_cluster")[1],
  jitter_by = NULL,
  downsample = 5000
)

Arguments

scExp_cf

A SingleCellExperiment
by

Color by sample_id or cell_cluster
jitter_by

Add jitter points of another layer (cell_cluster or sample_id)
downsample

Downsample for plotting

Value

A violin plot of intra-correlation

Examples

data(scExp)
plot_intra_correlation_scExp(scExp)