Violin plot of inter-correlation distribution between one or multiple groups and one reference group

Source: R/plotting_functions.R

Violin plot of inter-correlation distribution between one or multiple groups and one reference group

plot_inter_correlation_scExp(
  scExp_cf,
  by = c("sample_id", "cell_cluster")[1],
  jitter_by = NULL,
  reference_group = unique(scExp_cf[[by]])[1],
  other_groups = unique(scExp_cf[[by]]),
  downsample = 5000
)

Arguments

scExp_cf

A SingleCellExperiment
by

Color by sample_id or cell_cluster
jitter_by

Add jitter points of another layer (cell_cluster or sample_id)
reference_group

Character containing the reference group name to calculate correlation from.
other_groups

Character vector of the other groups for which to calculate correlation with the reference group.
downsample

Downsample for plotting

Value

A violin plot of inter-correlation

Examples

data(scExp)
plot_intra_correlation_scExp(scExp)