Retrieve Top differential markers

top_differential_markers.SingleCellExperiment(
  scExp,
  IDC_DA_list,
  top = 1,
  gene_col = "Gene",
  pseudogene_pattern = "Rik|Vmn|Gm|AW",
  distanceToTSS = 1000
)

Arguments

scExp	A SingleCellExperiment object
IDC_DA_list	A list of data.frame of differential features at each clustering iteration produced by `iterative_differential_clustering()` ("IDC_DA.qs").
top	An integer specifying the number of top features to retrieve per cluster.
gene_col	A character specifying the column in which to retrieve the gene / feature name.
pseudogene_pattern	A character specifying the pattern of 'pseudo-genes' to exclude from the top markers.
distanceToTSS	An integer specifying the maximum distance to consider a feature close enough to a gene.

Arguments

Value